Journal of biological and health sciences http://biotecnia.unison.mx

Universidad de Sonora

ISSN: 1665-1456

Prevalence of Bacterial Resistance from 2016 to 2018 at the General Hospital of Obregon, Sonora

Prevalencia de resistencia bacteriana de 2016 a 2018 en el Hospital General de Obregón, Sonora

Javier Nicolás González-González1, Ildefonso Guerrero-Encinas1, Marco Antonio Sotomayor-Demoss2, Yolanda Alicia López-Olivas2, Gloria Guadalupe Morales-Figueroa1, Luis Quihui-Cota1, Edith Valbuena-Gregorio3 & Marco Antonio López-Mata3*

1 Centro de Investigación en Alimentación y Desarrollo, A.C. (CIAD, A.C.) Carretera Gustavo Enrique Astiazarán Rosas No. 46. Col. La Victoria, 83304. Hermosillo, Sonora, México.

2 Hospital General de Ciudad Obregón. Boulevard Rodolfo Elías Calles, Fovissste 2, 85140. Ciudad Obregón, Sonora, México.

3 Departamento de Ciencias de la Salud, Universidad de Sonora, Campus Cajeme, Blvd. Bordo Nuevo S/N, A.P. 85040, Antiguo Providencia, Cd. Obregón, Sonora, México.

ABSTRACT

Antimicrobial resistance in Mexico is difficult to address due to the absence of a regulatory instance that effectively control the use and sale of antimicrobials; and the low survei- llance of prescription and self-medication. This study aimed to determine the prevalence of bacterial resistance to anti- biotics isolated from clinical samples in the General Hospital of Obregon, Sonora. Information was obtained from the cul- ture logs processed and analyzed at the Microbiology area of the Clinical Laboratory and its resistance to antibiotics, from December 2016 to January 2018. Escherichia coli, Klebsiella pneumoniae, and Staphylococcus aureus infections were the most common among patients from all care services. Bacte- ria such as S. aureus and E. coli, showed antibiotic resistance of up to 90 and 100 %. A high resistance was observed aga- inst benzylpenicillin at the intensive care unit service (100

%). High bacterial resistance to antibiotics was found from December 2016 to January 2018 in the present study, and this apparently remains unchanged in our country which was inferred by data reported by previous few Mexican studies. Keywords: Antimicrobial resistance; Surveillance; Antibio- tics; Antibiogram; E. coli; Mexican hospital.

RESUMEN

En México, la resistencia a los antimicrobianos es difícil de abordar debido a la ausencia de un organismo regulador que controle de manera efectiva el uso y la venta de antimicro- bianos; y la baja vigilancia de prescripción y automedicación. Este estudio tuvo como objetivo determinar la prevalencia de resistencia a antibióticos en bacterias aisladas de muestras clínicas en el Hospital General de Obregón, Sonora. En este estudio se recolectó información de los cultivos que se reali- zaron en el área de Microbiología del Laboratorio de Análisis Clínicos y su resistencia a antibióticos, desde diciembre de 2016 hasta enero de 2018, en el Hospital General de Obre- gón, Sonora. Las infecciones por Escherichia coli, Klebsiella pneumoniae y Staphylococcus aureus fueron las más frecuen- tes entre los pacientes de todos los servicios de atención.

*Correspondence author: Marco Antonio López-Mata e-mail: marco.lopezmata@unison.mx

Received: June 12, 2023

Accepted: August 2, 2023

Published: September 20, 2023

Bacterias, como E. coli y S. aureus mostraron resistencia a los antibióticos hasta en un 90 y 100 %. La bencilpenicilina fue el antibiótico al que se observó alta resistencia en el servicio de cuidados intensivos (100 %). En el presente estudio se encon- tró una alta resistencia bacteriana a los antibióticos desde diciembre de 2016 hasta enero de 2018 y, en comparación con pocos estudios mexicanos, se ha mantenido sin cambios. Palabras clave: Resistencia antimicrobiana; Vigilancia; Anti- bióticos; Antibiograma; E. coli; hospital mexicano.

INTRODUCTION

Antimicrobial resistance occurs when microorganisms, such as bacteria, acquire or develop biological mechanisms that make drugs no longer effective. This phenomenon can cause different problems in health systems, ranging from high mor- bidity and mortality to high medical costs worldwide (Kok et al., 2022; Liguori et al., 2022).

In Mexico, the concern of optimal surveillance in hos- pitals on bacterial resistance or multi-resistance has grown recently. The main bacteria associated with infections repor- ted by Mexican hospitals include Escherichia coli, Salmonella spp., Enterococcus spp., Staphylococcus aureus, Klebsiella spp., Shigella spp. and Acinetobacter baumannii (Garza-González et al., 2020).

Some factors can lead to the presence of these infec- tions, for example the reduction of patient immunity, a grea- ter variety of medical procedures, invasive techniques, and the transmission of drug-resistant bacteria within patients in crowded hospitals (Bakkeren et al., 2020). On the other hand, factors such as age, sex, nutritional status, and the presence of other concomitant pathologies can also play an important role (Humphries et al., 2021). Even so, there are different variations and frequencies of these infections among popu- lations which should be recorded for a better understanding of the problem, and to propose specific solutions.

Despite some epidemiological surveillance programs in northwest Mexico, a high rate of resistance to first-choice an- tibiotics is reported by health institutions (Bolado-Martínez

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Volume XXV, Issue 3

DOI: 10.18633/biotecnia.v25i3.2064

et al., 2018; 2022). A systematic governance analysis of global response to antimicrobial resistance, revealed a lack of re- search, monitoring, and evaluation of this health problem in Mexico. This is a reason for alert which encourages greater care in resistance patterns and surveillance programs (Patel et al., 2023). This step is important to know the length of the problem at the different health centers in northwest Mexico (Navarro-Navarro et al., 2013), to supports decision-makers to build programs with actions to reduce the prevalence, morbidity and mortality associated to bacterial antibiotic resistance.

Therefore, the present work aims to generate two-year- epidemiological information on the prevalence of antibac- terial resistance from samples of different service areas in a second Level Hospital in Northwest Mexico.

MATERIAL AND METHODS

A retrospective study was carried out at a hospital of nor- thwest Mexico. Information was collected from the culture logs of processed and analyzed samples at the Microbiolo- gy area of the Clinical Laboratory, from December 2016 to January 2018. Data from 1915 cultures with and without antibiogram from hospitalized and non-hospitalized patients (External Consultation area) were collected and processed using an Excel program database. Complete antibiogram and complete demographic information (date of the stu- dy, sex, age, and hospital unit service) was considered as inclusion criteria (n = 834). The age-range was from 0 to 99 years old. The diagnostic equipment used was the VITEK® 2 Compact (Biomeireux) with an extensive database for the identification of different microorganisms, which included information on bacterial sensitivity (S) and resistance (R) to different antibiotics. The collected data underwent proces- sing, enabling analysis of the prevalence by bacterial species and care services.

Statistical Analysis

The prevalence of isolated bacteria was estimated by age groups, sex, and service areas. In addition, these variables were used to determine the prevalence of bacterial resistan- ce and sensitivity. The above was calculated as percentage using the formula: P = (PR/N) x 100, where PR is the number of samples with bacterial resistance and/or sensitivity to antibiotics, N is the total number of samples recorded, and multiplied by one hundred. Difference between Gram- positive and Gram-negative bacteria, and the prevalence of antibiotic resistance and/or sensitivity was compared using the two sided Chi-square test with the package SPSS, 2011, at significant level of p < 0.05.

RESULTS AND DISCUSSION

General prevalence.

An overall bacterial prevalence of 42.8 % from 1945 records within the period December 2016 and January 2018 was es- timated. The prevalence of bacterial species is shown in Table

1. Escherichia coli (44.3 %) showed the highest prevalence followed by Klebsiella pneumoniae (7.2 %), Staphylococcus aureus (6.3 %), Staphylococcus epidermidis (6.2 %) and Pseudo- monas aeruginosa (5.2 %). On the other hand, Staphylococcus capitis, Staphylococcus lugdunensis, Achromobacter denitri- ficans, Aeromonas caviae, Cronobacter sakazakii, Raoultella ornithinolytica, Sphingomonas paucimobilis, Morganella spp., Shigella sonnei, Achromobacter xylosoxidans, Plesiomonas shigelloides, Ralstonia pickettii, Streptococcus intermedius, En- terococcus faecium, Bacillus spp., Kocuria rosea, Streptococcus dysgalactiae, Streptococcus parasanguinis and Streptococcus constellatus showed the lowest prevalence (≈ 0.12 %).

Regarding the high prevalence of E. coli, K. pneumoniae,

S. aureus, S. epidermidis and P. aeruginosa found in this study, a number of studies in the European Union (19,888 patients) published in 2012 also reported a high prevalence of hospital infections by E. coli (15.2 %), S. aureus (12.1 %), P. aeruginosa (11.2 %), and K. pneumoniae (8.1 %) (Zarb et al., 2012). Des- pite the level of prevalence and rank order are different to our results, the isolated bacterial species are the same. On the other hand, a surveillance network (PRONARES) in Chile, reported E. coli (35.9 %), S. aureus (20.6 %), and Klebsiella spp. (9.5%) as the predominant isolated species from a total of 5,251 biological samples (Trucco et al., 2002). Similarly, a meta-analysis from 40 different studies published in 2022, reported diarrheagenic E. coli as the most prevalent bacteria in Asia (22.8%) (Salleh et al., 2022). However, identification of type of E. coli in this study was not performed.

Prevalence according to Gram classification

Regarding 834 Gram stains, the prevalence of Gram-negative bacteria was significantly higher (613 isolates; 73.5 %) than Gram-positive bacteria (221 isolates; 26.5 %) (p < 0.05) (Figu- re 1).

In Mexico, reports from Leon Guanajuato and Mexico city in 2012 revealed a higher prevalence of Gram-positive (51.2 %) than Gram-negative bacteria (48.8 %) from 5,117 clinical cultures (Duarte-Raya and Granados-Ramírez, 2012). On the other hand, a previous study carried out at the State Cancer Center of ISSEMYM (Social Security Institute of the State of Mexico and Municipalities) in Mexico, reported 787 (59.9 %) infections associated to Gram-negative bacteria and 401 (30.5 %) to Gram-positive bacteria from a total of 1,313 infections (Romero et al., 2013). Differences between these trends may be attributed to influx of staff, patients, and con- tact with outside air in waiting rooms, and different cleaning and disinfection procedures by hospital services (Zambrano- Gari and Luna-Fontalvo, 2013).

Prevalence of bacteria per service unit

Table 2 shows the bacterial prevalence from 834 positive records per service unit. The service with the highest overall prevalence of bacterial species was the internal medicine (IM) with 241 isolates (28.8 %), followed by external consulta- tion (EC) with 133 isolates (15.9 %); gynecology (GYNE) with 82 isolates (9.8 %); neonatal special care unit (NSCU) with 81

Table 1. General prevalence of bacterial species isolated from clinical samples (n = 834).

Tabla 1. Prevalencia general de especies bacterianas aisladas de muestras clínicas (n = 834).

n =number of bacterial isolates.

isolates (9.7 %); pediatrics (PED) and emergency department (ED) with 75 isolates each one (8.9 %); surgery (SUR) with 64 (7.6 %); and pediatric emergencies (PEDE) with 52 (6.2 %). The intensive care unit (ICU) service showed the lowest prevalen- ce (15 isolates, 1.7 %).

The area with the highest reported infections was the IM (28.8 %) in this study. A study carried out in 2013 with 126 pa- tients at the Mexican Social Security Institute in Salamanca, Guanajuato, and Mexico City, reported a 9.5 % prevalence of hospital infections from which the highest prevalence (16.2

%) was observed at the IM area, followed by the SUR (12.5 %), the traumatology and orthopedics (5 %), and the GYNE and obstetrics (3.1 %). The high prevalence of infections at the IM in this study, is probably associated to the location of the urology service at the IM, where most urine culture analysis are performed (Castañeda-Martínez and Valdespino-Padilla, 2015).

In relation to EC, the second service unit with the ma- jor number of isolates, it showed the highest demand for

Figure 1. General prevalence (%) of bacterial isolates from 834 clinical samples according to their Gram classification. *Significant p-value by the Chi-square test.

Figura 1. La prevalencia general (%) de bacterias aisladas de 834 aislamientos de muestras clínicas según su clasificación Gram. *Valor p significativo por Chi-cuadrado prueba.

Table 2. Prevalence of bacterial species isolated from clinical samples (n=834) by care services.

Tabla 2. Prevalencia de especies bacterias aisladas de muestras clínicas (n=834) por servicios asistenciales.

n = number of bacterial isolates per care services; External Consultation (EC); Surgery (SUR); Gynecology (GYNE); Internal Medicine (IM); Pediatrics (PED); Gynecology (GYNE), Internal Medicine (IM); Intensive Care Unit (ICU); Neonatal Special Care Unit (NSCU); Emergency Department (ED); Pediatric Emergencies (PEDE).

laboratory requests. Therefore, this area can be regarded as an indicator of frequency and type of bacterial infections affecting a community.

On the other hand, a 2014 study of 360 samples at the Fernando Troconis University Hospital in Colombia, reported

S. haemolyticus as the most prevalent bacterium at the ICU service (81.1 %) (Vélez-Pereira and Caicedo, 2014). In this study, this bacterium also showed the highest prevalence at the ICU service (20 %). It should be noted that this bacterium can be easily transmitted between the potential sources of infection and hosts, such as patients, medical personal, and routine equipment.

Apparently, the uncontrolled application of broad-spec- trum antibiotics in ICU patients promotes the settlement of bacterial infections by opportunistic pathogens. This may be due to unawareness of the site of infection and the etiologi- cal agent, or prolonged use of catheters and often probes, as well as the contamination provoked by the personnel in charge of patient care (Russotto et al., 2015).

Prevalence by age and sex groups

Table 3 shows the prevalence of the main bacterial species isolated by age groups from 834 isolates. E. coli was predomi- nant in all age groups, and increased with age, being those over 60 years (52 %) the most susceptible age group. A study carried out at two cities of Honduras in 2014, analyzed 602 bacterial isolates, of which 84 (14 %) were from the 0-10 years group, 30 (5 %) from the 11 - 20 years group, 260 (43 %) from

the 21 - 60 years group, and 205 (34 %) from people over 61 years old. In addition, authors observed a higher prevalence of hospital infections in people over 18 years of age, but par- ticularly in the age over 60 years (Zúniga-Moya et al., 2016). It was proposed that older people are more sensitive to various stressors associated to a progressive loss of cellular homeos-

Table 3. Prevalence of bacteria isolated from 834 clinical samples by age groups.

Tabla 3. Prevalencia de bacterias aisladas de 834 muestras clínicas por gru- pos de edad.

N= total number per age of bacterial isolates of patients; n= number of bacterial isolates.

tasis which may lead to immunosenescence and greater exposure to different ailments (Ciaglia et al., 2022).

On the other hand, Table 4 shows E. coli as the most isolated bacteria from male and female patients. A higher prevalence was observed in female (50.8 %), with 251 isola- tes, than in male (35 %) patients with 119 isolates (p < 0.05). Furthermore, male had a higher prevalence of infections by

P. aeruginosa (9.4 %), S. aureus (8.2 %) and E. cloacae (7.3 %).

The disparity in infection prevalence between male and female patients may be explained by the anatomical and physiological differences which may promote a greater predisposition to urinary tract infections, particularly in fe- male (Alós, 2005). Likewise, other studies have reported that female are more susceptible to infections, but a clear physio- logical explanation for this event has not yet been proposed (Combes et al., 2009).

Table 4. Prevalence of the main bacteria isolated from 494 female and 340 male clinical samples.

Tabla 4. Prevalencia de las principales bacterias aisladas de muestras clíni- cas de 494 mujeres y 340 hombres.

*Significant p value by the Chi-square test. - No report of cases.

Prevalence of resistance and sensitivity

Table 5 shows the resistance and sensitivity prevalence by the most isolated bacteria from 834 clinical samples. The highest resistance was shown by K. pneumoniae to ampicillin (AMP) (100 %) and nitrofurantoin (NIT) (50.0 %); P. aeruginosa to trimethoprim/sulfamethoxazole (SXT) (100.0 %), AMP (97.6

%), and ampicillin/sulbactam (SAM) (97.6 %); Enterobacter cloacae to cefazolin (CZO) (100 %) and NIT (69.4 %), S. aureus (90.3 %) and S. epidermidis (97.7 %) to benzylpenicillin (PEN); and E. coli to AMP (78.3 %) and SAM (68.4 %).

On the other hand, the species which showed the highest sensitivity were E. coli to meropenem (MEM) (99.4

%) and tigecycline (TGC) (99.1 %); K. pneumoniae (98.2 %) to MEM, ertapenem (ETP), and amikacin (AMK); S. aureus (98.0

%) to TGC, vancomycin (VAN), SXT, NIT, Quinupristin/Dalfo- pristin (QDA), Linezolid (LNZ), and Rifampicin; S. epidermidis (100 %) to TGC, QDA, NIT, and LNZ; P. aeruginosa (72.09 %)to gentamicin (GEN) and Piperacillin/Tazobactam (TZP); and E. cloacae (88.89 %)to MEM, AMK, and TGC.

Table 5. Prevalence of bacterial resistance (%R) and sensitivity (%S) to the most frequently used antibiotics.

Tabla 5. Prevalencia de resistencia bacteriana (%R) y sensibilidad (%S) a los antibióticos más utilizados

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-

-

-

-

-

-

-

-

-

-

Ampicillin (AMP); Benzylpenicillin (PEN); Oxacillin (OXA); Cefazolin (CZO); Ceftriaxone (CRO); Cefepime (FEP); Aztreonam (ATM); Ampicillin/Sulbactam (SAM); Piperacillin/Tazobactam (TZP); Ertapenem (ETP); Meropenem (MEM); Ciprofloxacin (CIP); Levofloxacin (LVX); Moxifloxacin (MFX); Amikacin (AMK); Gentamicin (GEN); Tobramycin (TOB); Nitrofurantoin (NIT); trimethoprim/sulfamethoxazole (SXT); erythromycin (ERY); Clindamycin (CLI); Tetracycline (TCY); Tigecycline (TGC); Quinupristin/Dalfopristin (QDA); Linezolid (LNZ); Rifampicin (RIF); Vancomycin (VAN); extended spectrum beta-lactamases (ESBL).

Among the few published Mexican studies on bacterial resistance, the State Oncology Center of the Mexican Institu- te of Social Security of the State of Mexico, and Municipalities (ISSEMYM) in 2012, analyzed 4,652 samples and reported a high resistance of E. coli to AMP (86.7 %), ciprofloxacin (86.1

%), levofloxacin (85.3 %); and from 1,313 records P. aerugi- nosa (100 %) to tetracycline, CZO, and ceftriaxone (CRO). In addition, S. aureus, showed a high resistance to PEN (92.2

%), erythromycin (62.9 %), and clindamycin (62.4 %), and

S. epidermidis with a similar resistance trend to the same antibiotics (Romero et al., 2013). On the other hand, it has been recognized that the most common resistant bacteria associated to hospital infections are E. coli, K. pneumoniae,

and P. aeruginosa (Rello et al., 2019). In addition, an increase in resistance has been observed against CRO and amoxicillin (Rolain et al., 2016). It is probably that the number of bacteria capable of generating extended-spectrum beta-lactamases (ESBL) has increased worldwide (Hermann et al., 2006).

Antimicrobial resistance mechanisms can be categori- zed into four primary groups: (1) restricting drug uptake, (2) altering drug targets, (3) deactivating drugs, and (4) actively expelling drugs. Intrinsic resistance may involve limited drug uptake, drug deactivation, and drug efflux; while acquired resistance mechanisms may include modifying drug targets, drug deactivation, and drug efflux. Variations in structures lead to differences in the mechanisms used by gram-negative

and gram-positive bacteria. Gram-negative bacteria use all four main mechanisms, while gram-positive bacteria use less frequently the limiting drug uptake (due to the absence of an LPS outer membrane) and lack the capacity for certain types of drug efflux mechanisms (Reygaert, 2018).

Finally, a high prevalence of A. baumanni (8.61 %), E. coli (38.03 %), K. pneumoniae (37.41 %) and P. aeruginosa (15.94%) have been reported by some hospitals in Saudi Arabia (Aloraifi et al., 2023). A systematic review, from 2011 to 2021, reported that these bacteria are the most common multridrug-resistant specifically to aztreonam, ceftazidime, cefotaxime, related cxyimino-β-lactams, cephalosporins, and penicillins (Borgio et al., 2021; Pishtiwan and Khadija, 2019). Apparently, the trends of bacterial resistance based on pre- vious few published Mexican study data and those from this study remains unchanged, and probably is expected that this health problem increases in Mexico.

CONCLUSIONS

This study revealed a high prevalence of bacterial resistance to the first-choice antibiotics at a hospital of northwest Mexi- co. Infections caused by Gram-negative were more prevalent (73.5 %) than Gram-positive bacteria (26.5 %). In addition,

E. coli, K. pneumoniae and S. aureus were the most isolated bacteria species in all care services of the study hospital. E. cloacae, P. aeruginosa, and A. baumannii, showed a higher prevalence in male than in female, but it was the opposite trend for infections by E. coli. Also, a high resistance of E. coli to AMP (78.3 %), SAM (68.4 %), SXT (56.9 %) and ESBL (36.6

%) was found. Based on this, effective actions to reduce the impact caused by the inappropriate use of antibiotics at both local and national levels must be taken.

ACKNOWLEDGMENTS

The authors express their gratitude to the Mexican Council of Humanities Science and Technology (CONAHCyT) and the General Hospital of Ciudad Obregón Sonora, México.

CONFLICTS OF INTEREST

All authors have no conflict of interest to declare.

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